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Network inferenceReferenceWrapper function
ARACNEMargolin, Adam A., et al. "ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context." BMC bioinformatics7.Suppl 1 (2006): S7.aracne.wrap
C3NETAltay, Gökmen, and Frank Emmert-Streib. "Inferring the conservative causal core of gene regulatory networks." BMC Systems Biology 4.1 (2010): 132.c3net.wrap
CLRFaith, Jeremiah J., et al. "Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles." PLoS biology 5.1 (2007): e8.clr.wrap
GeneNetOpgen-Rhein, Rainer, and Korbinian Strimmer. "From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data." BMC systems biology 1.1 (2007): 37.genenet.wrap
Genie3Irrthum, Alexandre, Louis Wehenkel, and Pierre Geurts. "Inferring regulatory networks from expression data using tree-based methods." PloS one 5.9 (2010): e12776.genie3.wrap
MutRankObayashi, Takeshi, and Kengo Kinoshita. "Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression." DNA research 16.5 (2009): 249-260.mutrank.wrap
MRNETMeyer, Patrick E., et al. "Information-theoretic inference of large transcriptional regulatory networks." EURASIP journal on bioinformatics and systems biology2007 (2007).mrnet.wrap
MRNETBMeyer, Patrick, et al. "Information-Theoretic Inference of Gene Networks Using Backward Elimination." BIOCOMP. 2010.mrnetb.wrap
PCITReverter, Antonio, and Eva KF Chan. "Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks." Bioinformatics 24.21 (2008): 2491-2497.pcit.wrap
ZscorePrill, Robert J., et al. "Towards a rigorous assessment of systems biology models: the DREAM3 challenges." PloS one 5.2 (2010): e9202.zscore.wrap